Dr. Roland Wittler
- Wittler R. General encoding of canonical k-mers. Peer Community Journal. 2023;3: e87.
- Wittler R. General encoding of canonical k-mers. bioRxiv. 2023.
- Parmigiani L, Wittler R, Stoye J. Revisiting pangenome openness with k-mers. bioRxiv. 2022.
- Schulz T, Wittler R, Stoye J. Sequence-based pangenomic core detection. iScience. 2022;25(6): 104413.
- Schulz T, Wittler R, Rahmann S, Hach F, Stoye J. Detecting High Scoring Local Alignments in Pangenome Graphs. Bioinformatics. 2021;37(16):2266-2274.
- Rempel A, Wittler R. SANS serif: alignment-free, whole-genome based phylogenetic reconstruction. Bioinformatics. 2021;37(24):4868–4870.
- Wittler R. Alignment- and reference-free phylogenomics with colored de Bruijn graphs. Algorithms for Molecular Biology. 2020;15(1): 4.
- Schulz T, Wittler R, Rahmann S, Hach F, Stoye J. Detecting High Scoring Local Alignments in Pangenome Graphs. bioRxiv. 2020.
- Wittler R. Alignment- and reference-free phylogenomics with colored de Bruijn graphs. In: Huber K, Gusfield D, eds. Proceedings of WABI 2019. LIPIcs. Vol 143. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik; 2019.
- Wittler R. Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165. 2019.
- Luhmann N, Lafond M, Thévenin A, Ouangraoua A, Wittler R, Chauve C. The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2019;16(4):1364-1373.
- Holley G, Wittler R, Stoye J, Hach F. Dynamic Alignment-Free and Reference-Free Read Compression. JOURNAL OF COMPUTATIONAL BIOLOGY. 2018;25(7):825-836.
- Luhmann N, Chauve C, Stoye J, Wittler R. Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2018;15(6):2094-2100.
- Holley G, Wittler R, Stoye J, Hach F. Dynamic Alignment-Free and Reference-Free Read Compression. In: Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics. Vol 10229. 2017: 50-65.
- Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J. Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. In: Proceedings of CPM 2017. LIPIcs. Vol 78. 2017: 19:1-19:9.
- Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J. Faster Jumbled Indexing for Binary Run-Length Encoded Strings. arXiv: 1702.01280. 2017.
- Holley G, Wittler R, Stoye J. Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. Algorithms for Molecular Biology. 2016;11(1): 3.
- Luhmann N, Thévenin A, Ouangraoua A, Wittler R, Chauve C. The SCJ small parsimony problem for weighted gene adjacencies. In: Proceedings 12th International Symposium, ISBRA 2016. Lecture Notes in Computer Science. Vol 9683. Springer International Publishing; 2016: 200-210.
- Holley G, Wittler R, Stoye J. Bloom Filter Trie - a data structure for pan-genome storage. In: Pop M, Touzet H, eds. Algorithms in Bioinformatics. WABI 2015. Proceedings. Lecture Notes in Computer Science . Vol 9289. Berlin, Heidelberg: Springer; 2015: 217-230.
- Wittler R, Marschall T, Schönhuth A, Makinen V. Repeat- and error-aware comparison of deletions. Bioinformatics. 2015;31(18):2947-2954.
- Luhmann N, Chauve C, Stoye J, Wittler R. Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. In: Sérgio C, ed. Proc. of BSB 2014. LNBI. Vol 8826. Springer Verlag; 2014: 135-143.
- Wittler R. Correction: Unraveling overlapping deletions by agglomerative clustering. BMC Genomics. 2013;14(Suppl 1): S16.
- Dias Vieira Braga M, Chauve C, Dörr D, et al. The Potential of Family-Free Genome Comparison. In: Chauve C, El-Mabrouk N, Tannier E, eds. Models and Algorithms for Genome Evolution. Computational Biology Series. Vol 19. London: Springer Verlag; 2013: 287-307.
- Wittler R. Unraveling overlapping deletions by agglomerative clustering. BMC Genomics. 2013;14(Suppl 1): S12.
- Manuch J, Patterson M, Wittler R, Chauve C, Tannier E. Linearization of ancestral multichromosomal genomes. BMC Bioinformatics. 2012;13(Proc. of RECOMB-CG 2012): S11.
- Wittler R, Chauve C. Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes. BMC Bioinformatics. 2011;12(Suppl. 9):S21.
- Wittler R, Maňuch J, Patterson M, Stoye J. Consistency of Sequence-Based Gene Clusters. Journal of Computational Biology. 2011;18(9):1023-1039.
- Chauve C, Maňuch J, Patterson M, Wittler R. Tractability results for the Consecutive-Ones Property with multiplicity. In: Proceedings of CPM 2011. Vol 6661. 2011: 90-103.
- Wittler R, Stoye J. Consistency of Sequence-based Gene Clusters. In: Proc. of Recomb-CG 2010. LNBI. Vol 6398. Springer Verlag; 2010: 252-263.
- Wittler R. Phylogeny-based analysis of gene clusters. Bielefeld (Germany): Bielefeld University; 2010.
- Stoye J, Wittler R. A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2009;6(3):387-400.
Als Herausgeber*in
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Publikationsliste (PDF) im "Chicago"-Zitierstil
Publikationsliste (PDF) im "Frontiers"-Zitierstil
Publikationsliste (PDF) im "Harvard"-Zitierstil
Publikationsliste (PDF) im "IEEE"-Zitierstil
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- Wittler R. General encoding of canonical k-mers. Peer Community Journal. 2023;3: e87.
- Wittler R. General encoding of canonical k-mers. bioRxiv. 2023.
- Parmigiani L, Wittler R, Stoye J. Revisiting pangenome openness with k-mers. bioRxiv. 2022.
- Schulz T, Wittler R, Stoye J. Sequence-based pangenomic core detection. iScience. 2022;25(6): 104413.
- Schulz T, Wittler R, Rahmann S, Hach F, Stoye J. Detecting High Scoring Local Alignments in Pangenome Graphs. Bioinformatics. 2021;37(16):2266-2274.
- Rempel A, Wittler R. SANS serif: alignment-free, whole-genome based phylogenetic reconstruction. Bioinformatics. 2021;37(24):4868–4870.
- Wittler R. Alignment- and reference-free phylogenomics with colored de Bruijn graphs. Algorithms for Molecular Biology. 2020;15(1): 4.
- Schulz T, Wittler R, Rahmann S, Hach F, Stoye J. Detecting High Scoring Local Alignments in Pangenome Graphs. bioRxiv. 2020.
- Wittler R. Alignment- and reference-free phylogenomics with colored de Bruijn graphs. In: Huber K, Gusfield D, eds. Proceedings of WABI 2019. LIPIcs. Vol 143. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik; 2019.
- Wittler R. Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165. 2019.
- Luhmann N, Lafond M, Thévenin A, Ouangraoua A, Wittler R, Chauve C. The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2019;16(4):1364-1373.
- Holley G, Wittler R, Stoye J, Hach F. Dynamic Alignment-Free and Reference-Free Read Compression. JOURNAL OF COMPUTATIONAL BIOLOGY. 2018;25(7):825-836.
- Luhmann N, Chauve C, Stoye J, Wittler R. Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2018;15(6):2094-2100.
- Holley G, Wittler R, Stoye J, Hach F. Dynamic Alignment-Free and Reference-Free Read Compression. In: Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics. Vol 10229. 2017: 50-65.
- Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J. Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. In: Proceedings of CPM 2017. LIPIcs. Vol 78. 2017: 19:1-19:9.
- Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J. Faster Jumbled Indexing for Binary Run-Length Encoded Strings. arXiv: 1702.01280. 2017.
- Holley G, Wittler R, Stoye J. Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. Algorithms for Molecular Biology. 2016;11(1): 3.
- Luhmann N, Thévenin A, Ouangraoua A, Wittler R, Chauve C. The SCJ small parsimony problem for weighted gene adjacencies. In: Proceedings 12th International Symposium, ISBRA 2016. Lecture Notes in Computer Science. Vol 9683. Springer International Publishing; 2016: 200-210.
- Holley G, Wittler R, Stoye J. Bloom Filter Trie - a data structure for pan-genome storage. In: Pop M, Touzet H, eds. Algorithms in Bioinformatics. WABI 2015. Proceedings. Lecture Notes in Computer Science . Vol 9289. Berlin, Heidelberg: Springer; 2015: 217-230.
- Wittler R, Marschall T, Schönhuth A, Makinen V. Repeat- and error-aware comparison of deletions. Bioinformatics. 2015;31(18):2947-2954.
- Luhmann N, Chauve C, Stoye J, Wittler R. Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. In: Sérgio C, ed. Proc. of BSB 2014. LNBI. Vol 8826. Springer Verlag; 2014: 135-143.
- Wittler R. Correction: Unraveling overlapping deletions by agglomerative clustering. BMC Genomics. 2013;14(Suppl 1): S16.
- Dias Vieira Braga M, Chauve C, Dörr D, et al. The Potential of Family-Free Genome Comparison. In: Chauve C, El-Mabrouk N, Tannier E, eds. Models and Algorithms for Genome Evolution. Computational Biology Series. Vol 19. London: Springer Verlag; 2013: 287-307.
- Wittler R. Unraveling overlapping deletions by agglomerative clustering. BMC Genomics. 2013;14(Suppl 1): S12.
- Manuch J, Patterson M, Wittler R, Chauve C, Tannier E. Linearization of ancestral multichromosomal genomes. BMC Bioinformatics. 2012;13(Proc. of RECOMB-CG 2012): S11.
- Wittler R, Chauve C. Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes. BMC Bioinformatics. 2011;12(Suppl. 9):S21.
- Wittler R, Maňuch J, Patterson M, Stoye J. Consistency of Sequence-Based Gene Clusters. Journal of Computational Biology. 2011;18(9):1023-1039.
- Chauve C, Maňuch J, Patterson M, Wittler R. Tractability results for the Consecutive-Ones Property with multiplicity. In: Proceedings of CPM 2011. Vol 6661. 2011: 90-103.
- Wittler R, Stoye J. Consistency of Sequence-based Gene Clusters. In: Proc. of Recomb-CG 2010. LNBI. Vol 6398. Springer Verlag; 2010: 252-263.
- Wittler R. Phylogeny-based analysis of gene clusters. Bielefeld (Germany): Bielefeld University; 2010.
- Stoye J, Wittler R. A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2009;6(3):387-400.
Publikationsliste
Publikationsliste (CSV)
Publikationsliste (PDF) im "AMA"-Zitierstil
Publikationsliste (PDF) im "APA (6th ed.)"-Zitierstil
Publikationsliste (PDF) im "Chicago"-Zitierstil
Publikationsliste (PDF) im "Frontiers"-Zitierstil
Publikationsliste (PDF) im "Harvard"-Zitierstil
Publikationsliste (PDF) im "IEEE"-Zitierstil
Publikationsliste (PDF) im "LNCS"-Zitierstil
Publikationsliste (PDF) im "MLA"-Zitierstil
Download
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JSON-LD-Format
Turtle-Format
N3-Format